TGAC Capacity and Capability Challenge Programme

Genome sequence of Lactobacillus reuteri

Sequencing the genome of a key food species, the Common Carp, Cyprinus carpio

Digital transcriptomics to understand the evolution of flower size and the selfing syndrome

Sequencing the genome of an organism of unique interest for research on ageing: Heterocephalus glaber, the naked mole-rat

Comparative analysis of the metatranscriptome of the rhizosphere microbial community of pea, oat and wheat

Transcriptome analysis to determine the genetic basis of the high sugar trait in perennial ryegrass (Lolium perenne)

Transcriptome analysis of mice under different energy balance regimes: a platform comparison

Genome sequence and annotation of the medicinal maggot Lucilla sericata 

Natural history of SIV infection of chimpanzees

Novel viral discovery, gene expression analysis and identification of expressed endogenous retroviral-like sequences in canine hepatitis

Obtaining the genome seqence of the economically important UK pest and plant virus vector, the aphid Myzus periscae Sulz.

RNAseq transcriptome analysis of adaptively divergent phenotypes in Passion-flower butterflies (Genus: Heliconius)

Yeast genome re-sequencing to enhance national capability in microbial biotechnology and aid the development of novel bioinformatics

Development of a pipeline for reliable, quantitative and high-throughput analysis of crop epigenomes

Genetic diversity in fission yeast as a basis to analyze complex relationships between genotype, phenotype and environment

Analysis of chloroplast genomes using high-throughput sequencing methods

Chordate muscle transcriptomics in response to feeding

Optimisation of resequencing for Single Nucleotide Polymorphism analysis of AT-rich bacterial pathogens using Listeria monocytogenes as a model

The transcriptomic basis of shorebird behavioural dimorphism

Comparative genomics of nematode parasitic bacteria belonging to Pasteuria spp.

Rumen microbial utilisation of plant material: a functional core at the plant-microbe interface?

Capture sequencing of a 2 Mb locus associated with canine retinal degeneration mapped by GWAS.

Mutation discovery through TILLING-by-sequencing

Overcoming a lack of recombination and/or Identity-by-descent in positional cloning projects

Transcriptome analysis of the retina to identify stop and go signals for form-deprivation myopia (FDM) in chickens

Exploiting metabolic diversity in the Brassicaceae: underpinning methods

Development of an equine herpesvirus-1 (EHV-1) genome sequencing pipeline

Differential expression of parental alleles in the progeny of an interspecific cross in the energy crop Miscanthus

Evolution of organisms associated with methanogenic communities during the initiation of bioenergy fermentation

Rapid mapping of gene-trap insertions in the human genome to facilitate novel haploid genetic screens

Intra- and inter-host evolutionary dynamics of mammalian influenza viruses

SUGA: Sugar beet Genome Analysis for novel traits in arable crops

The MHC class II haplotype determines susceptibility to superantigen-dependent streptococcal disease in the horse

Epigenetic mechanisms of organismal adaptation to environmental change

Establishment of next-gen sequencing method for epigenetic methylation markers of DNA binding and transcriptional regulation

Genome-wide localization of the histone H2A.Z variant in Saccharomyces cerevisiae strains with a compromised unfolded protein response (UPR)

Assessing the Impact of the Influenza Antiviral Tamiflu on Freshwater Microbial Biofilms

Transcriptional Regulation of Urothelial Cytodifferentiation

Comparative digital transcriptional profiling of canine and human uveal melanomas

Generating a draft genome sequence for Cardamine hirsuta and SNP discovery/mapping

The genome of the arbuscular mycorrhizal fungus Glomus intraradices

Illumina Transcriptomic Sequencing of Complex Microbial Communities

Streptomyces dRNA seq: an emerging technique for mapping transcripts and small RNAs at the genome level

Dynamic alternative splicing in barley

The role of miRNAs in potato tuber formation

Genome-wide comparison of European (Apis mellifera) and Asian (A. cerana) honeybee to investigate parasite-mediated selection

Evolution and interplay between the interactomes of human genes responding to the cytokines TNFa and TGFb.

Evaluation of cDNA RAD to directly detect transcriptional variation in two non-model organisms, the snail Lymnaea stagnalis and the ladybird Harmonia axyridis

Identification of EHV-1 miRNAs expressed in lytic and latent infection

Global transcriptomic analysis to evaluate the role of Vpu in SIV pathogenesis in the natural host

Small RNA identification and comparative transcriptome analysis in Mycobacterium bovis field isolates by RNA-seq.

Investigating the molecular basis for mucin glycan degradation in human commensal bacteria

Early-lethal mutant identification through deep-sequencing of wild-type sibs

Whole transcriptome sequencing of Ligusticum grayi (Apiaceae): a medicinal plant used for digestive ailments

Colonisation of roots by plant growth promoting rhizosphere bacteria

Identification of social and individually-beneficial virulence genes via insertion site sequencing following a high-throughput screen of transposon mutants

Do hosts and symbionts conspire to eliminate exogenous bacteria during metamorphosis?

Analysis of the quasi-species nature of Bovine viral diarrhea virus infection

Arabidopsis Thermosensitivity Hi-C Pilot Study

Development of genomic tools to assist isolation of novel disease resistance genes from wheat relatives for deployment in wheat