11. Genome sequence of Lactobacillus reuteri

3. Sequencing the genome of a key food species, the Common Carp, Cyprinus carpio

4. Digital transcriptomics to understand the evolution of flower size and the selfing syndrome

5. Sequencing the genome of an organism of unique interest for research on ageing: Heterocephalus glaber, the naked mole-rat

6. Comparative analysis of the metatranscriptome of the rhizosphere microbial community of pea, oat and wheat

7. Transcriptome analysis to determine the genetic basis of the high sugar trait in perennial ryegrass (Lolium perenne)

8. Transcriptome analysis of mice under different energy balance regimes: a platform comparison

1. Genome sequence and annotation of the medicinal maggot Lucilla sericata

2. Natural history of SIV infection of chimpanzees

3. Novel viral discovery, gene expression analysis and identification of expressed endogenous retroviral-like sequences in canine hepatitis

4. Obtaining the genome seqence of the economically important UK pest and plant virus vector, the aphid Myzus periscae Sulz.

5. RNAseq transcriptome analysis of adaptively divergent phenotypes in Passion-flower butterflies (Genus: Heliconius)

6. Yeast genome re-sequencing to enhance national capability in microbial biotechnology and aid the development of novel bioinformatics

7. Development of a pipeline for reliable, quantitative and high-throughput analysis of crop epigenomes

1. Genetic diversity in fission yeast as a basis to analyze complex relationships between genotype, phenotype and environment

2. Analysis of chloroplast genomes using high-throughput sequencing methods

3. Chordate muscle transcriptomics in response to feeding

4. Optimisation of resequencing for Single Nucleotide Polymorphism analysis of AT-rich bacterial pathogens using Listeria monocytogenes as a model

5. The transcriptomic basis of shorebird behavioural dimorphism

6. Comparative genomics of nematode parasitic bacteria belonging to Pasteuria spp.

7. Rumen microbial utilisation of plant material: a functional core at the plant-microbe interface?

8. Capture sequencing of a 2 Mb locus associated with canine retinal degeneration mapped by GWAS.

9. Mutation discovery through TILLING-by-sequencing

10. Overcoming a lack of recombination and/or Identity-by-descent in positional cloning projects

1. Transcriptome analysis of the retina to identify stop and go signals for form-deprivation myopia (FDM) in chickens

2. Exploiting metabolic diversity in the Brassicaceae: underpinning methods

3. Development of an equine herpesvirus-1 (EHV-1) genome sequencing pipeline

4. Differential expression of parental alleles in the progeny of an interspecific cross in the energy crop Miscanthus

5. Evolution of organisms associated with methanogenic communities during the initiation of bioenergy fermentation

6. Rapid mapping of gene-trap insertions in the human genome to facilitate novel haploid genetic screens

7. Intra- and inter-host evolutionary dynamics of mammalian influenza viruses

8. SUGA: Sugar beet Genome Analysis for novel traits in arable crops

9. The MHC class II haplotype determines susceptibility to superantigen-dependent streptococcal disease in the horse

10. Epigenetic mechanisms of organismal adaptation to environmental change

11. Genome-wide localization of the histone H2A.Z variant in Saccharomyces cerevisiae strains with a compromised unfolded protein response (UPR)

12.Assessing the Impact of the Influenza Antiviral Tamiflu on Freshwater Microbial Biofilms

13. Transcriptional Regulation of Urothelial Cytodifferentiation

14. Comparative digital transcriptional profiling of canine and human uveal melanomas

15. The genome of the arbuscular mycorrhizal fungus Glomus intraradices

1. Illumina Transcriptomic Sequencing of Complex Microbial Communities

2. Streptomyces dRNA seq: an emerging technique for mapping transcripts and small RNAs at the genome level

3. Dynamic alternative splicing in barley

4. The role of miRNAs in potato tuber formation

5. Genome-wide comparison of European (Apis mellifera) and Asian (A. cerana) honeybee to investigate parasite-mediated selection

6. Evolution and interplay between the interactomes of human genes responding to the cytokines TNFa and TGFb.

7. Evaluation of cDNA RAD to directly detect transcriptional variation in two non-model organisms, the snail Lymnaea stagnalis and the ladybird Harmonia axyridis

8. Identification of EHV-1 miRNAs expressed in lytic and latent infection

9. Global transcriptomic analysis to evaluate the role of Vpu in SIV pathogenesis in the natural host

10. Small RNA identification and comparative transcriptome analysis in Mycobacterium bovis field isolates by RNA-seq.

11. Investigating the molecular basis for mucin glycan degradation in human commensal bacteria

12. Early-lethal mutant identification through deep-sequencing of wild-type sibs

13. Whole transcriptome sequencing of Ligusticum grayi (Apiaceae): a medicinal plant used for digestive ailments

14. Colonisation of roots by plant growth promoting rhizosphere bacteria

15. Identification of social and individually-beneficial virulence genes via insertion site sequencing following a high-throughput screen of transposon mutants

16. Do hosts and symbionts conspire to eliminate exogenous bacteria during metamorphosis?

17. Analysis of the quasi-species nature of Bovine viral diarrhea virus infection

18. Arabidopsis Thermosensitivity Hi-C Pilot Study

19. Development of genomic tools to assist isolation of novel disease resistance genes from wheat relatives for deployment in wheat